DOWNLOADS

The Jain Lab provides downloadable data sets and software in a number of areas. Following are links.

Structure-Based Drug Design:
Our Surflex software packages are available to academic researchers for non-commercial purposes by email request. Commercial users may inquire about licensing terms as well. Please note that all requests for Surflex may take weeks for a response. We process requests in batch.

All interested parties are welcome to download benchmarking data as well. The benchmarking data files are listed below according to the paper in which results were presented. Note that the scripts for the benchmarks are not updated for minor version changes and require minor editing to specify the correct binary executable.

Jain JCAMD 2010 Test Data (QMOD2)

Langham/Jain JMedChem 2009 Test Data (QMOD)

Jain JCAMD 2009 Test Data (Protein Flexibility)

Pham/Jain JCAMD 2008 Test Data (Custom Scoring)

Cleves/Jain JCAMD 2008 Test Data (Inductive Bias)

Jain JCAMD 2008 Test Data (Docking Eval)

Jain JCAMD 2007 Test Data (Surflex-Dock 2.1)

Pham/Jain JMedChem 2006 Test Data (rev1)

Cleves/Jain JMedChem 2006 Test Data

JMedChem 2004 Test Data (rev1)

JMedChem 2003 Test Data

Pathway Modeling:
Our QPACA software and data package is available here.

Transcription Factor Motif Finding:
Our MaMF software and data package is available here.

Heterogeneous Data Analysis:
Software for performing a number of different types of data analysis (see Olshen and Jain 2002) can be downloaded here.

Microarray Image Quantification:
UCSF Spot is a program for microarray image quantification (see Jain et al. 2002). It is fully automatic, from the gridding process through ratio derivation. Spot is available for research purposes to academic and non-profit organizations here with examples here.